[{"accession":[{"name":"jPOST dataset identifier","value":"JPST000109","accession":"MS:1002632","cvLabel":"MS"},{"name":"ProteomeXchange accession number","value":"PXD005839","accession":"MS:1001919","cvLabel":"MS"}],"title":"pY-IP of Colorectal cancer cells","description":"Phosphotyrosine status were compared between colorectal cancer cells which is sensitive or resistant to Cetuximab. Activated kinases in resistant cells were examined as targets to overcome the resistance.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Takeshi Tomonaga"},{"accession":"MS:1000590","name":"contact affiliation","value":"National Institute of Biomedical Innovation, Health and Nutrition"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Yuichi Abe"},{"accession":"MS:1000590","name":"contact affiliation","value":"National Institute of Biomedical Innovation, Health and Nutrition"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"Phosphotyrosine"},{"accession":"MS:1001925","name":"submitter keyword","value":"Colorectal cancer"},{"accession":"MS:1001925","name":"submitter keyword","value":"Drug resistance"},{"accession":"MS:1001925","name":"submitter 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cancer tissues ","description":"Quantitative phosphoproteome analyses of colorectal cancer tissues from 24 patients (12 with or without metastasis) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS\/MS with iTRAQ labeling(metastasis:iTRAQ115 or 117, no metastasis: iTRAQ114 or 116). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Takeshi Tomonaga"},{"accession":"MS:1000590","name":"contact affiliation","value":"National Institute of Biomedical Innovation, Japan"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Mariko Ito"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto Univ."}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"colorectal cancer; FASP; IMAC; missing protein; phosphopeptide; PhosphoSitePlus"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP location","value":"ftp:\/\/ftp.jpostdb.org\/JPST000204"},{"accession":"MS:1002633","name":"jPOST dataset URI","value":"https:\/\/repository.jpostdb.org\/entry\/JPST000204"}],"datasetFiles":[{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000204\/CRC_phospho_iTRAQ_01.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000204\/CRC_phospho_iTRAQ_02.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000204\/CRC_phospho_iTRAQ_03.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000204\/CRC_phospho_iTRAQ_04.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file 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The obtained results were searched against UniProt DB by Mascot, and the identified peptides and proteins were filtered at 1% FDR thresholds by searching against the randomized decoy DB both at peptide and protein levels. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Takeshi Tomonaga"},{"accession":"MS:1000590","name":"contact affiliation","value":"National Institute of Biomedical Innovation, Japan"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Mariko Ito"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto Univ."}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"colorectal cancer; FASP; missing protein;"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI 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accession number","value":"PXD005174","accession":"MS:1001919","cvLabel":"MS"}],"title":"Phosphoproteomic data of HCT116 cells","description":"Quantitative phosphoproteome analyses of colorectal cancer cell lines (HCT116 metastatic clone and the parent clone without metastasis) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS\/MS with iTRAQ labeling(metastasis:iTRAQ116 or 117, no metastasis: iTRAQ114 or 115). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Takeshi Tomonaga"},{"accession":"MS:1000590","name":"contact affiliation","value":"National Institute of Biomedical Innovation, Japan"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Mariko Ito"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto Univ."}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"colorectal cancer; FASP; IMAC; missing protein; phosphopeptide; PhosphoSitePlus"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP location","value":"ftp:\/\/ftp.jpostdb.org\/JPST000206"},{"accession":"MS:1002633","name":"jPOST dataset URI","value":"https:\/\/repository.jpostdb.org\/entry\/JPST000206"}],"datasetFiles":[{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000206\/120404_mHCT116_phospho_01.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000206\/120404_mHCT116_phospho_02.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000206\/120404_mHCT116_phospho_03.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000206\/120404_mHCT116_phospho_04.raw"},{"accession":"PRIDE:0000404","name":"Associated raw file 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The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Takeshi Tomonaga"},{"accession":"MS:1000590","name":"contact affiliation","value":"National Institute of Biomedical Innovation, Japan"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Mariko Ito"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto Univ."}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"colorectal cancer; FASP; IMAC; missing protein; phosphopeptide; PhosphoSitePlus"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI 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list.xlsx"}]},{"accession":[{"name":"jPOST dataset identifier","value":"JPST000208","accession":"MS:1002632","cvLabel":"MS"},{"name":"ProteomeXchange accession number","value":"PXD005172","accession":"MS:1001919","cvLabel":"MS"}],"title":"Proteomics comparison between SW480 and SW620 cells","description":"Quantitative proteome analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using SCX-RP-MS\/MS with SILAC labeling(SW480: light-label, SW620: heavy-label). The obtained results were searched against UniProt DB by Mascot, and the identified peptides and proteins were filtered at 1% FDR thresholds by searching against the randomized decoy DB both at peptide and protein levels. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Takeshi Tomonaga"},{"accession":"MS:1000590","name":"contact affiliation","value":"National Institute of Biomedical Innovation, Japan"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Mariko Ito"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto Univ."}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"colorectal cancer; FASP; missing protein;"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP location","value":"ftp:\/\/ftp.jpostdb.org\/JPST000208"},{"accession":"MS:1002633","name":"jPOST dataset URI","value":"https:\/\/repository.jpostdb.org\/entry\/JPST000208"}],"datasetFiles":[{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000208\/111222_HL02.RAW"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000208\/111222_HL03.RAW"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000208\/111222_HL04.RAW"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000208\/111222_HL05.RAW"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST000208\/111222_HL06.RAW"},{"accession":"PRIDE:0000404","name":"Associated raw 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metastasis) were carried out using SCX-RP-MS\/MS with iTRAQ labeling(metastasis:iTRAQ115 or 117, no metastasis: iTRAQ114 or 116). \nFor this reanalysis, MS Datasets were processed for peak picking with MaxQuant v1.6.2.10, and the generated peak lists were searched against human entries of UniProt\/Swiss-Prot release 2018_10 using three search engines: MaxQuant v1.6.2.10, X!Tandem v2015.04.01.1, and Comet 2015.02 rev. 0. The decoy database was generated by reversing sequences from the database. Then, the sum of the total number of matched b\/y ions and the total number of amino acids comprising the peptide sequence tag were counted to score the reliability of peptide identification independent of these search engines. Finally, the 1% false discovery rate was controlled by the target-decoy approach with this score.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Yasushi Ishihama"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto University"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"jPOST reanalysis"},{"accession":"MS:1000590","name":"contact affiliation","value":"jPOST"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"reanalysis"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP 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dataset of JPST000204","description":"Quantitative phosphoproteome analyses of colorectal cancer tissues from 24 patients (12 with or without metastasis) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS\/MS with iTRAQ labeling(metastasis:iTRAQ115 or 117, no metastasis: iTRAQ114 or 116).\nFor this reanalysis, MS Datasets were processed for peak picking with MaxQuant v1.6.2.10, and the generated peak lists were searched against human entries of UniProt\/Swiss-Prot release 2018_10 using three search engines: MaxQuant v1.6.2.10, X!Tandem v2015.04.01.1, and Comet 2015.02 rev. 0. The decoy database was generated by reversing sequences from the database. Then, the sum of the total number of matched b\/y ions and the total number of amino acids comprising the peptide sequence tag were counted to score the reliability of peptide identification independent of these search engines. Finally, the 1% false discovery rate was controlled by the target-decoy approach with this score.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Yasushi Ishihama"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto University"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"jPOST reanalysis"},{"accession":"MS:1000590","name":"contact affiliation","value":"jPOST"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"reanalysis"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP 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The decoy database was generated by reversing sequences from the database. Then, the sum of the total number of matched b\/y ions and the total number of amino acids comprising the peptide sequence tag were counted to score the reliability of peptide identification independent of these search engines. Finally, the 1% false discovery rate was controlled by the target-decoy approach with this score.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Yasushi Ishihama"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto University"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"jPOST reanalysis"},{"accession":"MS:1000590","name":"contact affiliation","value":"jPOST"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"reanalysis"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP 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number","value":"RPXD018479","accession":"MS:1001919","cvLabel":"MS"}],"title":"Reanalysis dataset of JPST000206","description":"Quantitative phosphoproteome analyses of colorectal cancer cell lines (HCT116 metastatic clone and the parent clone without metastasis) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS\/MS with iTRAQ labeling(metastasis:iTRAQ116 or 117, no metastasis: iTRAQ114 or 115). \nFor this reanalysis, MS Datasets were processed for peak picking with MaxQuant v1.6.2.10, and the generated peak lists were searched against human entries of UniProt\/Swiss-Prot release 2018_10 using three search engines: MaxQuant v1.6.2.10, X!Tandem v2015.04.01.1, and Comet 2015.02 rev. 0. The decoy database was generated by reversing sequences from the database. Then, the sum of the total number of matched b\/y ions and the total number of amino acids comprising the peptide sequence tag were counted to score the reliability of peptide identification independent of these search engines. Finally, the 1% false discovery rate was controlled by the target-decoy approach with this score.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Yasushi Ishihama"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto University"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"jPOST reanalysis"},{"accession":"MS:1000590","name":"contact affiliation","value":"jPOST"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"reanalysis"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP 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analyses of colorectal cancer cell lines (metastatis: SW620, non-metastatis: SW480) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS\/MS with SILAC labeling (SW480: light-label, SW620: heavy-label).\nFor this reanalysis, MS Datasets were processed for peak picking with MaxQuant v1.6.2.10, and the generated peak lists were searched against human entries of UniProt\/Swiss-Prot release 2018_10 using three search engines: MaxQuant v1.6.2.10, X!Tandem v2015.04.01.1, and Comet 2015.02 rev. 0. The decoy database was generated by reversing sequences from the database. Then, the sum of the total number of matched b\/y ions and the total number of amino acids comprising the peptide sequence tag were counted to score the reliability of peptide identification independent of these search engines. Finally, the 1% false discovery rate was controlled by the target-decoy approach with this score.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Yasushi Ishihama"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto University"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"jPOST reanalysis"},{"accession":"MS:1000590","name":"contact affiliation","value":"jPOST"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"reanalysis"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP 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release 2018_10 using three search engines: MaxQuant v1.6.2.10, X!Tandem v2015.04.01.1, and Comet 2015.02 rev. 0. The decoy database was generated by reversing sequences from the database. Then, the sum of the total number of matched b\/y ions and the total number of amino acids comprising the peptide sequence tag were counted to score the reliability of peptide identification independent of these search engines. Finally, the 1% false discovery rate was controlled by the target-decoy approach with this score.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Yasushi Ishihama"},{"accession":"MS:1000590","name":"contact affiliation","value":"Kyoto University"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"jPOST reanalysis"},{"accession":"MS:1000590","name":"contact affiliation","value":"jPOST"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"reanalysis"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP 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A total of 11,833 proteins were identified, including 531 of the 748 cancer-associated proteins defined in the Catalogue of Somatic Mutations in Cancer. 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In the discovery cohort, plasma samples were processed for sEV isolation using size-exclusion chromatography. The sEV isolates were digested with mass spectrometry-grade trypsin, and the resulting peptides were quantified using the Pierce Quantitative Colorimetric Peptide Assay. Peptides from each group (n = 10) were pooled, and 100 \u00c2\u00b5g of the pooled peptides were aliquoted for phosphopeptide enrichment using the ProteoExtract Phosphopeptide Enrichment TiO2 Kit. Both the enriched phosphopeptides and corresponding unenriched peptides were analyzed in parallel using label-free quantitative mass spectrometry in three technical replicates. Findings were validated in individual samples (n = 50) through immunoblot analysis in the validation cohort.","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"(1) Dr. Churat Weeraphan, (2) Assoc. Prof. Dr. Supinya Thanapongpichat and (3) Assoc. 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(2, 3) Prince of Songkla University, Songkhla, Thailand"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Chris"},{"accession":"MS:1000590","name":"contact affiliation","value":"Chulabhorn Research Institute"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"phosphoproteomics; small extracellular vesicles; high-risk adenoma; colorectal cancer; filamin-A"}],"species":[{"terms":[{"accession":"MS:1001469","name":"taxonomy: scientific name","value":"Homo sapiens (Human)"},{"accession":"MS:1001467","name":"taxonomy: NCBI TaxID","value":"9606"}]}],"instruments":[],"modifications":[],"fullDatasetLinks":[{"accession":"MS:1002852","name":"Dataset FTP location","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905"},{"accession":"MS:1002633","name":"jPOST dataset URI","value":"https:\/\/repository.jpostdb.org\/entry\/JPST003905"}],"datasetFiles":[{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/N-PO4_RC1_1_6729.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/N-PO4_RC1_1_6730.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/N-PO4_RC1_1_6731.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C2H-PO4_RC3_1_6720.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C2H-PO4_RC3_1_6721.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C2H-PO4_RC3_1_6722.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C3M-PO4_RC4_1_6714.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C3M-PO4_RC4_1_6716.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C3M-PO4_RC4_1_6717.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/N-Un_RC5_1_6742.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/N-Un_RC5_1_6743.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/N-Un_RC5_1_6744.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C2H-Un_RC7_1_6752.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C2H-Un_RC7_1_6754.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C2H-Un_RC7_1_6755.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C3M-Un_RC8_1_6757.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C3M-Un_RC8_1_6758.d.zip"},{"accession":"PRIDE:0000404","name":"Associated raw file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/C3M-Un_RC8_1_6759.d.zip"},{"accession":"PRIDE:0000408","name":"Search engine output file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/RAW_MS_Proteome.csv"},{"accession":"PRIDE:0000408","name":"Search engine output file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/RAW_MS_Phospho.csv"},{"accession":"PRIDE:0000410","name":"Other type file URI","value":"ftp:\/\/ftp.jpostdb.org\/JPST003905\/Proteome & Phosphoproteome Analysis_results.xlsx"}]},{"accession":[{"name":"jPOST dataset identifier","value":"JPST003966","accession":"MS:1002632","cvLabel":"MS"},{"name":"ProteomeXchange accession number","value":"PXD066787","accession":"MS:1001919","cvLabel":"MS"}],"title":"Potent and Pleiotropic Effects of Preussin B on Inhibition of Intestinal Cholesterol Absorption: Integrative Mechanisms of Action and Proteomic Analysis","description":"Preussin (Asperidine B) has recently shown its lipid-lowering effects by inhibiting intestinal absorption in human colorectal adenocarcinoma (Caco-2) cells and ex vivo intestinal loop in rats. While statins are widely prescribed as the primary line drug of choice for lowering hyperlipidemia, ezetimibe is the only drug that reduces intestinal cholesterol absorption, and is also optional for statin-nonresponsive individuals. To gain more understanding of the mechanisms of action and lead compounds, the derivatives of preussin: TP3, TP4, TP5, TP6, and TP7 have recently been synthesized, and the structures were confirmed using 1D and 2D nuclear magnetic resonance (NMR) spectroscopy. However, whether these derivatives exhibited inhibitory effects on cholesterol absorption is unknown. Thus, this study aims to investigate the most potent inhibitory effect of cholesterol absorption of preussin derivatives using fluorescent-micelle cholesterol transport in intestinal Caco-2 cells, confirmed by an in vivo cholesterol absorption assay. Possible targets of the lead compounds were identified using a protein binding assay and label-free quantification using proteomic analyses. Results showed that all tested preussin derivatives markedly inhibited cholesterol absorption in the intestinal Caco2 cells to a similar extent to preussin and ezetimibe. TP5 (preussin B) consistently displayed a significant reduction of plasma cholesterol, identical to preussin and ezetimibe, with the same potency in rats. In addition, the proteomic analysis found that substantial differentially expressed changes in six proteins are involved in the lipid metabolism pathway. Interestingly, GOT2, as one of these six proteins in the lipid transport pathway, consistently interacts with TP5. The molecular docking and dynamic prediction showed that TP5 coupled with GOT2 at a pocket comparable to its cofactor. These findings suggest that preussin B has therapeutic potential as a candidate for a cholesterol absorption inhibitor to treat hyperlipidemia. ","publications":[],"contacts":[{"terms":[{"accession":"MS:1002332","name":"lab head"},{"accession":"MS:1000586","name":"contact name","value":"Chutima S. Vaddhanaphuti"},{"accession":"MS:1000590","name":"contact affiliation","value":"Department of Physiology, Faculty of Medicine, Chiang Mai University"}]},{"terms":[{"accession":"MS:1002037","name":"dataset submitter"},{"accession":"MS:1000586","name":"contact name","value":"Dr.Wararat Chiangjong"},{"accession":"MS:1000590","name":"contact affiliation","value":"Mahidol University"}]}],"keywords":[{"accession":"MS:1001925","name":"submitter keyword","value":"cholesterol absorption"},{"accession":"MS:1001925","name":"submitter keyword","value":"preussin"},{"accession":"MS:1001925","name":"submitter keyword","value":"preussin B"},{"accession":"MS:1001925","name":"submitter keyword","value":"preussin analogues"},{"accession":"MS:1001925","name":"submitter keyword","value":"proteomics"},{"accession":"MS:1001925","name":"submitter keyword","value":"lipid-lowering"},{"accession":"MS:1001925","name":"submitter 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